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Benchmark data sets: SRP

Data sources

  • SRP:
  • noise: 1 source of noise:
    • viral genomes of:
      • Acute_Bee_paralysis_virus_isolated_Poland_1
      • Chikungunya_virus_strain_TSI-GSD-218-VR1
      • European_bat_lyssavirus_2_isolate_RV1333
      • Lac_victoria_Marburg_virus_Angola_2005_Strain_Ang1386
      • Potato_virus_Y
      • tomato_Ringspot_Virus

Sets

About the data:

  • size of R (nb of references): 4
  • references length (min/avg/max): 302 / 368.75 / 523
  • size of T: 100
  • size of T2: 296
  • size of F (viral): 240
  • size of F2 (viral): 1168

How to run the benchmarking engine on this benchmark

We assume all requirements are satisfied (see benchmarking tools, and that a file tools.xml is present in the current directory.

mkdir SRP
cd SRP
unzip ../brasero_SRP.zip 
cp ../tools.xml .
java -jar ../braseroComparator_1.0.jar -d results_viral references_set true_events_with_viral_noise_set tools.xml
java -jar ../braseroAnalyzer_1.0.jar results_viral
cd results_viral
inkscape -z -A all_snspRoc.pdf all_snspRoc.svg
acroread all_snspRoc.pdf
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Page last modified on December 09, 2010, at 03:21 PM EST